nf-core/seqinspector
Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and group specific Multiqc reports. The pipeline is targeting core facilities or research groups with larger sequencing throughput.
genomicsquality-control
Version history
What’s Changed
- Zenodo by @maxulysse in https://github.com/nf-core/seqinspector/pull/180
- Back to dev by @maxulysse in https://github.com/nf-core/seqinspector/pull/181
- FIX: Remove diff for bwamem2/mem by @maxulysse in https://github.com/nf-core/seqinspector/pull/182
- FIX: tag collision warning by @maxulysse in https://github.com/nf-core/seqinspector/pull/183
- FIX: No fasta provided by @maxulysse in https://github.com/nf-core/seqinspector/pull/185
- Add a TAG for MultiQC by @maxulysse in https://github.com/nf-core/seqinspector/pull/184
- remove slack url report by @maxulysse in https://github.com/nf-core/seqinspector/pull/186
- prepare release 1.0.1 by @maxulysse in https://github.com/nf-core/seqinspector/pull/187
- Fix GHA by @maxulysse in https://github.com/nf-core/seqinspector/pull/189
- FIX: GHA - indentation by @maxulysse in https://github.com/nf-core/seqinspector/pull/190
- Release 1.0.1 by @maxulysse in https://github.com/nf-core/seqinspector/pull/188
Full Changelog: https://github.com/nf-core/seqinspector/compare/1.0.0…1.0.1
Initial release of seqinspector
What’s Changed
- Skip RUNDIRPARSER if no rundir information is available by @matrulda in https://github.com/nf-core/seqinspector/pull/167
- Address review comments by @maxulysse in https://github.com/nf-core/seqinspector/pull/168
- prepare release 1.0.0 by @maxulysse in https://github.com/nf-core/seqinspector/pull/169
- rescure size from the pipeline tests by @maxulysse in https://github.com/nf-core/seqinspector/pull/171
- fix conda env for rundirparser by @maxulysse in https://github.com/nf-core/seqinspector/pull/172
- addess review comments by @maxulysse in https://github.com/nf-core/seqinspector/pull/173
- Minor code polish by @maxulysse in https://github.com/nf-core/seqinspector/pull/174
- Update all modules and subworkflows + migrate to topics versions by @maxulysse in https://github.com/nf-core/seqinspector/pull/175
- FIX: No modules binaries by @maxulysse in https://github.com/nf-core/seqinspector/pull/176
- Remove unused modules (bowtie2/build, fastqscreen/buildfromindex) by @maxulysse in https://github.com/nf-core/seqinspector/pull/177
- Fix schema and docs by @maxulysse in https://github.com/nf-core/seqinspector/pull/178
- Update minimal Nextflow version by @maxulysse in https://github.com/nf-core/seqinspector/pull/179
- Release 1.0.0 by @maxulysse in https://github.com/nf-core/seqinspector/pull/170
Full Changelog: https://github.com/nf-core/seqinspector/commits/1.0.0
run with
video introduction
subscribers
171
stars
23
open issues
32
open PRs
8
last release
5 days ago
last update
5 days ago