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nf-core/riboseq
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Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.

This is the development version of the pipeline.
Launch development version https://github.com/nf-core/riboseq
  • Introduction
  • Usage
  • Parameters
  • Output
  • Releases
    • 1.2.0
    • 1.1.0
    • 1.0.1
    • 1.0.0
    • dev
Introduction Usage Parameters Output Releases
  • 1.2.0
  • 1.1.0
  • 1.0.1
  • 1.0.0
  • dev
run with
See the docs on how to configure the Seqera Platform CLI.
  • nf-core
  • Nextflow
  • Seqera Platform
subscribers
162
stars
23
open issues
20
open PRs
4
last release
3 months ago
last update
3 months ago
included modules
anota2seq_anota2seqrunbbmap_bbsplitbedtools_genomecovbowtie2_alignbowtie2_build and 51 more modules
included subworkflows
bam_dedup_stats_samtools_umicollapsebam_dedup_stats_samtools_umitoolsbam_dedup_umibam_sort_stats_samtoolsbam_stats_samtools and 11 more subworkflows
contributors
Github user pinin4fjords
Github user maxulysse
Github user iraiosub
Github user Caroline-99
Github user JackCurragh
Github user FelixKrueger
Github user andreirie
Github user drpatelh
get help
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