• Home
  • Pipelines
  • Resources
    • Components
    • Modules
    • Subworkflows

    • Configs
    • Shared configs

    • Plugins & Actions
    • nft-utils
    • setup-nextflow
    • setup-nf-test
  • Docs
  • Community
    • What's happening
    • Advisories
    • Blog

    • Events
    • Bytesize Talks
    • Hackathons
    • Training
    • Talks
    • Weekly Helpdesks

    • Programs and groups
    • Special interest groups
    • In-progress RFCs
    • Mentorships
    • Contributors
    • Shop new
    • Connect game 👾
  • About
    • About nf-core
    • Stickers
    • Governance
    • Marketing
    • Code of conduct

    • Publications
    • Statistics

    • Join nf-core
    • Select theme
    • Light
    • Dark
    • System
    • Select theme
    • Light
    • Dark
    • System
    Join nf-core Join nf-core

nf-core/crisprseq
Edit

A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (targeted) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (screening).

crisprcrispr-analysiscrispr-casngs
This is the development version of the pipeline.
Launch development version https://github.com/nf-core/crisprseq
  • Introduction
  • Usage
  • Parameters
  • Output
  • Releases
    • 2.3.0
    • 2.2.1
    • 2.2.0
    • 2.1.1
    • 2.1.0
    • 2.0.0
    • 1.0
    • dev
Introduction Usage Parameters Output Releases
  • 2.3.0
  • 2.2.1
  • 2.2.0
  • 2.1.1
  • 2.1.0
  • 2.0.0
  • 1.0
  • dev
  • Usage
    • Screening
    • Targeted
See the source code for this page
Built less than a minute ago
Making awesome workflows since 2018.

Supported by:

+ + +
See the source code for this website on GitHub:
https://github.com/nf-core/website