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nf-core/crisprseq
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A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (targeted) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (screening).

crisprcrispr-analysiscrispr-casngs
This is the development version of the pipeline.
Launch development version https://github.com/nf-core/crisprseq
  • Introduction
  • Usage
  • Parameters
  • Output
  • Releases
    • 2.3.0
    • 2.2.1
    • 2.2.0
    • 2.1.1
    • 2.1.0
    • 2.0.0
    • 1.0
    • dev
Introduction Usage Parameters Output Releases
  • 2.3.0
  • 2.2.1
  • 2.2.0
  • 2.1.1
  • 2.1.0
  • 2.0.0
  • 1.0
  • dev
run with
See the docs on how to configure the Seqera Platform CLI.
  • nf-core
  • Nextflow
  • Seqera Platform
video introduction
Play
subscribers
152
stars
57
open issues
29
open PRs
3
last release
over 1 year ago
last update
over 1 year ago
included modules
bowtie2_alignbowtie2_buildbwa_indexbwa_memcat_fastq and 16 more modules
included subworkflows
utils_nextflow_pipelineutils_nfcore_pipelineutils_nfschema_plugin
contributors
Github user LaurenceKuhl
Github user mirpedrol
Github user mashehu
Github user alan-tracey
Github user mschaffer-incyte
Github user MartaSanvicente
Github user medmaca
Github user joannakraw
Github user msanvicente
get help
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