Description

Test for the presence of suitable NCBI settings or create them on the fly.

Input

name:type
description
pattern

ids{:bash}

:string

List of id settings

Output

name:type
description
pattern

ncbi_settings{:bash}

*.mkfg{:bash}

:file

An NCBI user settings file.

*.mkfg

versions_sratools{:bash}

${task.process}{:bash}

:string

The name of the process

sratools{:bash}

:string

The name of the tool

prefetch --version 2>&1 | grep -Eo '[0-9.]+'{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

sratools{:bash}

:string

The name of the tool

prefetch --version 2>&1 | grep -Eo '[0-9.]+'{:bash}

:eval

The expression to obtain the version of the tool